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KMID : 0364820190550040456
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Korean Journal of Microbiology
2019 Volume.55 No. 4 p.456 ~ p.458
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Complete genome sequence of Panacibacter ginsenosidivorans Gsoil 1550 T , a ginsenoside-converting bacterium, isolated from soil of a ginseng field
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Keum Dong-Ho
Lee Byoung-Hee
Lee Ki-Eun
Lee Soon-Youl
Im Wan-Taek
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Abstract
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A yellow-colored, long rod baterial strain of low convexity, designated Panacibacter ginsenosidivorans Gsoil 1550 T was isolated from soil of a ginseng field collected in Pocheon, Republic of Korea. Gsoil 1550 T showed the ability to convert major ginsenosides Rb1, Rc, and Rd to minor ginsenoside F2, and its whole genome was sequenced. The whole genome sequence of Panacibacter ginsenosidivorans Gsoil 1550 T consisted of one circular chromosome of 5,528,026 bp, with 44.6% G + C content. Of the 4,657 predicted genes, 4,572 were proteincording genes, 52 were RNAs, and 33 were pseudogenes. From the complete genome sequence of the strain Gsoil 1550 T , we found several glycoside hydrolase-encoding genes that may be involved in the conversion of major ginsenosides into minor ginsenosides, antibiotic biosynthesis-encoding genes, and cobalamin B12-binding domain-containing genes.
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KEYWORD
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Panacibacter ginsenosidivorans, complete genome, ginseng soil, glycoside hydrolase, PacBio RS II
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